Bio2BEL miRBase¶
Bio2BEL miRBase converts miRBase resources to BEL.
Models¶
SQLAlchemy database models.
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class
bio2bel_mirbase.models.
Sequence
(**kwargs)[source]¶ Represents an miRBase sequence.
See https://www.ebi.ac.uk/miriam/main/datatypes/MIR:00000078
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mirbase_id
¶ miRBase sequence matching
MI\d{7}
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class
bio2bel_mirbase.models.
MatureSequence
(**kwargs)[source]¶ Represents a miRBase mature sequence.
See: https://www.ebi.ac.uk/miriam/main/datatypes/MIR:00000235
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mirbase_mature_id
¶ miRBase mature sequence matching
MIMAT\d{7}
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class
bio2bel_mirbase.models.
Species
(**kwargs)[source]¶ Represents a taxonomy.
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division
¶ Three letter division code
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name
¶ Three letter species code
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organism
¶ Organism code
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taxonomy_id
¶ NCBI taxonomy identifier
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class
bio2bel_mirbase.models.
Base
(**kwargs)¶ The most base type